Takes output from GetFossils and places extinct lineages in the tree and produces a properly formatted table of fossil samples from lineages that survive to the present (k fossils).

ProcessSimSample(phy, f)



a complete phylogeny that includes both extant and extinct lineages.


the table of sampled lineages under the fossilized birth-death process obtained from GetFossils.


Returns an object that contains:


a tree of extant taxa and sampled extinct tips.


a table of k fossils sampled, formatted to be input into MiSSE, hisse, MuHiSSE.